SubtiBank SubtiBank
yqkA [2018-12-09 17:35:17]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yqkA [2018-12-09 17:35:17]

unknown
locus
BSU23670
pI
8.16
mw
38.88 kDa
protein length
343 aa Sequence Blast
gene length
1029 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    2,462,193 → 2,463,224

    Expression and Regulation

    Operons

    genes
    [gene|5B8A6D282E34683726BD6C36E09A6C36E8F99795|yqjY]-[gene|9F88AC3A792F4EE8AA853849BBCF5065717B1D8B|yqjZ]-[gene|3ECD25A4ED9556E74112285B11FC180A7091D730|yqkA]-[gene|DC1C1D4BE1A7F4E28792A2B8273AFE2C7F90E58C|yqkB]-[gene|30363923724EBD39C27967B25B486C71453190D1|yqkC]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|F0BC150F59730E64BA9AB3F979544EF6B5CC4E9E|polY2]-[gene|9BC3DF46C944A0FD5CAAB4513C4AF00EFC5FC8D5|yqjX]-[gene|5B8A6D282E34683726BD6C36E09A6C36E8F99795|yqjY]-[gene|9F88AC3A792F4EE8AA853849BBCF5065717B1D8B|yqjZ]-[gene|3ECD25A4ED9556E74112285B11FC180A7091D730|yqkA]-[gene|DC1C1D4BE1A7F4E28792A2B8273AFE2C7F90E58C|yqkB]-[gene|30363923724EBD39C27967B25B486C71453190D1|yqkC]
    description
    [Pubmed|22383849]

    regulatory mechanism

  • [protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA]: repression, [Pubmed|15469515,16267290], in [regulon|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA regulon]

    • regulation

  • induced upon DNA damage ([protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA]) [Pubmed|15469515,16267290]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-C407 (yqkA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2405 NBRP B. subtilis, Japan]
  • BKE23670 (Δ[gene|3ECD25A4ED9556E74112285B11FC180A7091D730|yqkA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE23670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATTCAATCATTCGTGTTCTC, downstream forward: _UP4_TTATGAACATACATGTGACA
  • BKK23670 (Δ[gene|3ECD25A4ED9556E74112285B11FC180A7091D730|yqkA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK23670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATTCAATCATTCGTGTTCTC, downstream forward: _UP4_TTATGAACATACATGTGACA